IL_9F1B_336

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

AGA*(PSU)A(PSU)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_336 not in the Motif Atlas

Homologous match to IL_8P9A_270

Geometric discrepancy: 0.1238

The information below is about IL_8P9A_270

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9F1B|1|B5|A|1688
9F1B|1|B5|G|1689
9F1B|1|B5|A|1690
*
9F1B|1|B5|PSU|1718
9F1B|1|B5|A|1719
9F1B|1|B5|PSU|1720

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BI

60S ribosomal protein L10