IL_9F1B_350

3D structure

PDB id

9F1B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CCC*GGCG

Length

7 nucleotides

Bulged bases

9F1B|1|B5|C|3891

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1B_350 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.2496

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

9F1B|1|B5|C|3866
9F1B|1|B5|C|3867
9F1B|1|B5|C|3868
*
9F1B|1|B5|G|3889
9F1B|1|B5|G|3890
9F1B|1|B5|C|3891
9F1B|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains