IL_9F1C_030

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AG(OMG)GCAAG*CU

Length

10 nucleotides

Bulged bases

9F1C|1|A2|G|601

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_030 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.106

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

9F1C|1|A2|A|600
9F1C|1|A2|G|601
9F1C|1|A2|OMG|602
9F1C|1|A2|G|603
9F1C|1|A2|C|604
9F1C|1|A2|A|605
9F1C|1|A2|A|606
9F1C|1|A2|G|607
*
9F1C|1|A2|C|637
9F1C|1|A2|U|638

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ab

Small ribosomal subunit protein uS5

Chain Ai

40S ribosomal protein S9