IL_9F1C_041

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_041 not in the Motif Atlas

Geometric match to IL_4V88_395

Geometric discrepancy: 0.219

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

9F1C|1|A2|G|752
9F1C|1|A2|G|753
9F1C|1|A2|C|754
9F1C|1|A2|G|755
*
9F1C|1|A2|C|791
9F1C|1|A2|C|792
9F1C|1|A2|C|793

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6