IL_9F1C_054

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GCUAG*CUUGGACC

Length

13 nucleotides

Bulged bases

9F1C|1|A2|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_054 not in the Motif Atlas

Geometric match to IL_4V88_434

Geometric discrepancy: 0.1479

The information below is about IL_4V88_434

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

9F1C|1|A2|G|953
9F1C|1|A2|C|954
9F1C|1|A2|U|955
9F1C|1|A2|A|956
9F1C|1|A2|G|957
*
9F1C|1|A2|C|968
9F1C|1|A2|U|969
9F1C|1|A2|U|970
9F1C|1|A2|G|971
9F1C|1|A2|G|972
9F1C|1|A2|A|973
9F1C|1|A2|C|974
9F1C|1|A2|C|975

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain An

Small ribosomal subunit protein uS11

Chain B5

Large subunit ribosomal RNA; LSU rRNA