IL_9F1C_111

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

9F1C|1|B5|G|119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_111 not in the Motif Atlas

Geometric match to IL_1NBS_009

Geometric discrepancy: 0.2299

The information below is about IL_1NBS_009

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

9F1C|1|B5|C|118
9F1C|1|B5|G|119
9F1C|1|B5|A|120
9F1C|1|B5|A|121
*
9F1C|1|B5|U|152
9F1C|1|B5|G|153

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15

Chain Bh

60S ribosomal protein L35