IL_9F1C_146

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9F1C|1|B5|G|743, 9F1C|1|B5|C|813

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_146 not in the Motif Atlas

Geometric match to IL_8C3A_022

Geometric discrepancy: 0.2427

The information below is about IL_8C3A_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9F1C|1|B5|G|740
9F1C|1|B5|A|741
9F1C|1|B5|A|742
9F1C|1|B5|G|743
9F1C|1|B5|G|744
9F1C|1|B5|U|745
9F1C|1|B5|G|746
9F1C|1|B5|G|747
*
9F1C|1|B5|U|808
9F1C|1|B5|G|809
9F1C|1|B5|U|810
9F1C|1|B5|U|811
9F1C|1|B5|A|812
9F1C|1|B5|C|813
9F1C|1|B5|A|814
9F1C|1|B5|G|815
9F1C|1|B5|C|816

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14

Chain BS

Large ribosomal subunit protein eL20