IL_9F1C_220

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9F1C|1|B5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_220 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.115

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9F1C|1|B5|C|2710
9F1C|1|B5|G|2711
9F1C|1|B5|U|2712
9F1C|1|B5|A|2713
9F1C|1|B5|A|2714
9F1C|1|B5|C|2715
*
9F1C|1|B5|G|2720
9F1C|1|B5|G|2721
9F1C|1|B5|A|2722
9F1C|1|B5|U|2723
9F1C|1|B5|A|2724
9F1C|1|B5|A|2725
9F1C|1|B5|G|2726

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41

Chain Bp

60S ribosomal protein L37a