IL_9F1C_230

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

UGCU*G(OMG)UAAA

Length

10 nucleotides

Bulged bases

9F1C|1|B5|A|3478, 9F1C|1|B5|A|3479

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_230 not in the Motif Atlas

Geometric match to IL_3WBM_002

Geometric discrepancy: 0.3301

The information below is about IL_3WBM_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9F1C|1|B5|U|3436
9F1C|1|B5|G|3437
9F1C|1|B5|C|3438
9F1C|1|B5|U|3439
*
9F1C|1|B5|G|3475
9F1C|1|B5|OMG|3476
9F1C|1|B5|U|3477
9F1C|1|B5|A|3478
9F1C|1|B5|A|3479
9F1C|1|B5|A|3480

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

40S ribosomal protein S3a

Chain BA

Large ribosomal subunit protein uL2