IL_9F1C_253

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CAG*CGUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_253 not in the Motif Atlas

Homologous match to IL_8C3A_108

Geometric discrepancy: 0.1274

The information below is about IL_8C3A_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9F1C|1|B5|C|3989
9F1C|1|B5|A|3990
9F1C|1|B5|G|3991
*
9F1C|1|B5|C|4009
9F1C|1|B5|G|4010
9F1C|1|B5|U|4011
9F1C|1|B5|G|4012
9F1C|1|B5|G|4013

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BJ

60S ribosomal protein L11

Chain BT

60S ribosomal protein L21