IL_9F1C_262

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

G(OMC)(PSU)C*G(PSU)G(A2M)GC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_262 not in the Motif Atlas

Geometric match to IL_3MEI_004

Geometric discrepancy: 0.3393

The information below is about IL_3MEI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34618.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

6

Unit IDs

9F1C|1|B5|G|4201
9F1C|1|B5|OMC|4202
9F1C|1|B5|PSU|4203
9F1C|1|B5|C|4204
*
9F1C|1|B5|G|4266
9F1C|1|B5|PSU|4267
9F1C|1|B5|G|4268
9F1C|1|B5|A2M|4269
9F1C|1|B5|G|4270
9F1C|1|B5|C|4271

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BK

Nascent chain

Chain BV

Ribosomal protein L23