IL_9F1C_274

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9F1C|1|B5|C|4466

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_274 not in the Motif Atlas

Geometric match to IL_5TBW_114

Geometric discrepancy: 0.2584

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

9F1C|1|B5|C|4328
9F1C|1|B5|C|4329
9F1C|1|B5|A|4330
9F1C|1|B5|U|4331
*
9F1C|1|B5|A|4463
9F1C|1|B5|G|4464
9F1C|1|B5|G|4465
9F1C|1|B5|C|4466
9F1C|1|B5|G|4467

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BO

Large ribosomal subunit protein uL13