IL_9F1C_320

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GAC*GUUU

Length

7 nucleotides

Bulged bases

9F1C|1|A2|U|1017

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_320 not in the Motif Atlas

Homologous match to IL_8C3A_510

Geometric discrepancy: 0.0922

The information below is about IL_8C3A_510

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

9F1C|1|A2|G|926
9F1C|1|A2|A|927
9F1C|1|A2|C|928
*
9F1C|1|A2|G|1015
9F1C|1|A2|U|1016
9F1C|1|A2|U|1017
9F1C|1|A2|U|1018

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain Am

40S ribosomal protein S13