IL_9F1D_001

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGCAU*A(PSU)A(PSU)U

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_001 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.284

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

9F1D|1|A2|A|22
9F1D|1|A2|G|23
9F1D|1|A2|C|24
9F1D|1|A2|A|25
9F1D|1|A2|U|26
*
9F1D|1|A2|A|649
9F1D|1|A2|PSU|650
9F1D|1|A2|A|651
9F1D|1|A2|PSU|652
9F1D|1|A2|U|653

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ai

40S ribosomal protein S9

Chain Aw

40S ribosomal protein S23