IL_9F1D_075

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

C(4AC)G*CA(OMG)G

Length

7 nucleotides

Bulged bases

9F1D|1|A2|A|1490

QA status

Modified nucleotides: 4AC, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_075 not in the Motif Atlas

Geometric match to IL_6IA2_002

Geometric discrepancy: 0.165

The information below is about IL_6IA2_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9F1D|1|A2|C|1337
9F1D|1|A2|4AC|1338
9F1D|1|A2|G|1339
*
9F1D|1|A2|C|1489
9F1D|1|A2|A|1490
9F1D|1|A2|OMG|1491
9F1D|1|A2|G|1492

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AG

40S ribosomal protein S29

Chain Ab

Small ribosomal subunit protein uS5

Chain Ac

40S ribosomal protein S3

Chain Ap

Small ribosomal subunit protein uS9

Chain At

40S ribosomal protein uS10