IL_9F1D_079

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

ACUA*U(OMU)CU

Length

8 nucleotides

Bulged bases

9F1D|1|A2|C|1404, 9F1D|1|A2|U|1405

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_079 not in the Motif Atlas

Geometric match to IL_4V88_456

Geometric discrepancy: 0.1762

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

9F1D|1|A2|A|1403
9F1D|1|A2|C|1404
9F1D|1|A2|U|1405
9F1D|1|A2|A|1406
*
9F1D|1|A2|U|1442
9F1D|1|A2|OMU|1443
9F1D|1|A2|C|1444
9F1D|1|A2|U|1445

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein RACK1

Chain Ap

Small ribosomal subunit protein uS9

Chain At

40S ribosomal protein uS10