IL_9F1D_094

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UUA*U(OMU)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_094 not in the Motif Atlas

Homologous match to IL_8C3A_477

Geometric discrepancy: 0.1149

The information below is about IL_8C3A_477

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

9F1D|1|A2|U|1730
9F1D|1|A2|U|1731
9F1D|1|A2|A|1732
*
9F1D|1|A2|U|1804
9F1D|1|A2|OMU|1805
9F1D|1|A2|G|1806

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BV

Ribosomal protein L23