IL_9F1D_097

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGGAU*AGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_097 not in the Motif Atlas

Homologous match to IL_8C3A_480

Geometric discrepancy: 0.1665

The information below is about IL_8C3A_480

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.1

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9F1D|1|A2|C|1743
9F1D|1|A2|G|1744
9F1D|1|A2|G|1745
9F1D|1|A2|A|1746
9F1D|1|A2|U|1747
*
9F1D|1|A2|A|1789
9F1D|1|A2|G|1790
9F1D|1|A2|A|1791
9F1D|1|A2|A|1792
9F1D|1|A2|G|1793

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain BW

Ribosomal protein L24