IL_9F1D_137

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UUCC*GGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_137 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3485

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9F1D|1|B5|U|528
9F1D|1|B5|U|529
9F1D|1|B5|C|530
9F1D|1|B5|C|531
*
9F1D|1|B5|G|624
9F1D|1|B5|G|625
9F1D|1|B5|G|626
9F1D|1|B5|G|627

Current chains

Chain B5

28S rRNA

Nearby chains