IL_9F1D_156

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_156 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3157

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9F1D|1|B5|G|1380
9F1D|1|B5|G|1381
9F1D|1|B5|A|1382
9F1D|1|B5|U|1383
9F1D|1|B5|C|1384
*
9F1D|1|B5|G|1410
9F1D|1|B5|C|1411
9F1D|1|B5|G|1412
9F1D|1|B5|C|1413
9F1D|1|B5|A|1414
9F1D|1|B5|C|1415

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BQ

Large ribosomal subunit protein eL18

Chain Bb

60S ribosomal protein L29