IL_9F1D_188
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GACCCCAGAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9F1D|1|B5|C|1874, 9F1D|1|B5|A|1980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_188 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.1735
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9F1D|1|B5|G|1872
9F1D|1|B5|A|1873
9F1D|1|B5|C|1874
9F1D|1|B5|C|1875
9F1D|1|B5|C|1876
9F1D|1|B5|C|1877
9F1D|1|B5|A|1878
9F1D|1|B5|G|1879
9F1D|1|B5|A|1880
9F1D|1|B5|A|1881
9F1D|1|B5|A|1882
9F1D|1|B5|A|1883
*
9F1D|1|B5|U|1977
9F1D|1|B5|G|1978
9F1D|1|B5|A|1979
9F1D|1|B5|A|1980
9F1D|1|B5|A|1981
9F1D|1|B5|A|1982
9F1D|1|B5|U|1983
9F1D|1|B5|G|1984
9F1D|1|B5|G|1985
9F1D|1|B5|A|1986
9F1D|1|B5|U|1987
9F1D|1|B5|G|1988
9F1D|1|B5|G|1989
9F1D|1|B5|C|1990
9F1D|1|B5|G|1991
9F1D|1|B5|C|1992
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BB
- Ribosomal protein L3
- Chain BI
- 60S ribosomal protein L10
- Chain BO
- Large ribosomal subunit protein uL13
- Chain Bf
- 60S ribosomal protein L35a
- Chain Bm
- Ubiquitin-ribosomal protein eL40 fusion protein
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