IL_9F1D_192

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

9F1D|1|B5|A|1941

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_192 not in the Motif Atlas

Geometric match to IL_1MMS_002

Geometric discrepancy: 0.178

The information below is about IL_1MMS_002

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_51387.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

21

Unit IDs

9F1D|1|B5|G|1940
9F1D|1|B5|A|1941
9F1D|1|B5|G|1942
9F1D|1|B5|U|1943
9F1D|1|B5|G|1944
*
9F1D|1|B5|C|1953
9F1D|1|B5|U|1954
9F1D|1|B5|C|1955

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bt

60S ribosomal protein L12