IL_9F1D_217

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9F1D|1|B5|G|3571

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_217 not in the Motif Atlas

Geometric match to IL_5TBW_077

Geometric discrepancy: 0.1476

The information below is about IL_5TBW_077

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9F1D|1|B5|A|2693
9F1D|1|B5|G|2694
9F1D|1|B5|U|2695
9F1D|1|B5|C|2696
9F1D|1|B5|G|2697
9F1D|1|B5|G|2698
*
9F1D|1|B5|C|3569
9F1D|1|B5|U|3570
9F1D|1|B5|G|3571
9F1D|1|B5|U|3572

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BV

Ribosomal protein L23