IL_9F1D_218

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9F1D|1|B5|U|2723

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_218 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0782

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9F1D|1|B5|C|2710
9F1D|1|B5|G|2711
9F1D|1|B5|U|2712
9F1D|1|B5|A|2713
9F1D|1|B5|A|2714
9F1D|1|B5|C|2715
*
9F1D|1|B5|G|2720
9F1D|1|B5|G|2721
9F1D|1|B5|A|2722
9F1D|1|B5|U|2723
9F1D|1|B5|A|2724
9F1D|1|B5|A|2725
9F1D|1|B5|G|2726

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41

Chain Bp

60S ribosomal protein L37a