IL_9F1D_244

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

A(OMG)A*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_244 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.0956

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

9F1D|1|B5|A|3675
9F1D|1|B5|OMG|3676
9F1D|1|B5|A|3677
*
9F1D|1|B5|U|3796
9F1D|1|B5|U|3797
9F1D|1|B5|U|3798

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Aa

40S ribosomal protein S3a

Chain Bi

60S ribosomal protein L36