IL_9F1D_246
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GUGAGGC*GCUC
- Length
- 11 nucleotides
- Bulged bases
- 9F1D|1|B5|G|3812, 9F1D|1|B5|C|3908, 9F1D|1|B5|U|3909
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_246 not in the Motif Atlas
- Homologous match to IL_5TBW_096
- Geometric discrepancy: 0.2249
- The information below is about IL_5TBW_096
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
9F1D|1|B5|G|3810
9F1D|1|B5|U|3811
9F1D|1|B5|G|3812
9F1D|1|B5|A|3813
9F1D|1|B5|G|3814
9F1D|1|B5|G|3815
9F1D|1|B5|C|3816
*
9F1D|1|B5|G|3907
9F1D|1|B5|C|3908
9F1D|1|B5|U|3909
9F1D|1|B5|C|3910
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- Large ribosomal subunit protein uL2
- Chain BG
- Large ribosomal subunit protein eL8
- Chain BX
- Large ribosomal subunit protein uL23
Coloring options: