IL_9F1D_275

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGUA(PSU)(OMG)U*GCGAAG

Length

13 nucleotides

Bulged bases

9F1D|1|B5|U|4380

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_275 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.3887

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9F1D|1|B5|U|4378
9F1D|1|B5|G|4379
9F1D|1|B5|U|4380
9F1D|1|B5|A|4381
9F1D|1|B5|PSU|4382
9F1D|1|B5|OMG|4383
9F1D|1|B5|U|4384
*
9F1D|1|B5|G|4407
9F1D|1|B5|C|4408
9F1D|1|B5|G|4409
9F1D|1|B5|A|4410
9F1D|1|B5|A|4411
9F1D|1|B5|G|4412

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BW

Ribosomal protein L24

Chain Bd

60S ribosomal protein L31