IL_9F1D_285

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UCCCG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_285 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3838

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9F1D|1|B5|U|4624
9F1D|1|B5|C|4625
9F1D|1|B5|C|4626
9F1D|1|B5|C|4627
9F1D|1|B5|G|4628
*
9F1D|1|B5|C|4669
9F1D|1|B5|G|4670
9F1D|1|B5|U|4671
9F1D|1|B5|C|4672
9F1D|1|B5|A|4673

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

60S ribosomal protein L14

Chain BO

Large ribosomal subunit protein uL13