IL_9F1D_295

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_295 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2482

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

9F1D|1|B5|A|4753
9F1D|1|B5|G|4754
9F1D|1|B5|A|4755
9F1D|1|B5|G|4756
*
9F1D|1|B5|C|4771
9F1D|1|B5|G|4772
9F1D|1|B5|A|4773
9F1D|1|B5|U|4774

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Ah

40S ribosomal protein S8

Chain BR

Ribosomal protein L19