IL_9F1D_326

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAUGC*(OMG)AGG

Length

9 nucleotides

Bulged bases

9F1D|1|A2|U|1398

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_326 not in the Motif Atlas

Geometric match to IL_8P9A_419

Geometric discrepancy: 0.3804

The information below is about IL_8P9A_419

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9F1D|1|A2|C|1396
9F1D|1|A2|A|1397
9F1D|1|A2|U|1398
9F1D|1|A2|G|1399
9F1D|1|A2|C|1400
*
9F1D|1|A2|OMG|1448
9F1D|1|A2|A|1449
9F1D|1|A2|G|1450
9F1D|1|A2|G|1451

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AF

Small ribosomal subunit protein RACK1

Chain Ap

Small ribosomal subunit protein uS9

Chain Aq

40S ribosomal protein eS17

Chain At

40S ribosomal protein uS10