IL_9F1D_353

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9F1D|1|B5|A2M|3517, 9F1D|1|B5|C|3523, 9F1D|1|B5|C|3542

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_353 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1114

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9F1D|1|B5|C|3513
9F1D|1|B5|5MC|3514
9F1D|1|B5|A|3515
9F1D|1|B5|A|3516
9F1D|1|B5|A2M|3517
9F1D|1|B5|U|3518
9F1D|1|B5|G|3519
9F1D|1|B5|C|3520
9F1D|1|B5|C|3521
9F1D|1|B5|U|3522
9F1D|1|B5|C|3523
9F1D|1|B5|OMG|3524
*
9F1D|1|B5|OMC|3540
9F1D|1|B5|G|3541
9F1D|1|B5|C|3542
9F1D|1|B5|G|3543

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Az

60S ribosomal protein L41