IL_9F1D_370
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- AUUAGA*(PSU)A(PSU)(PSU)CU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_370 not in the Motif Atlas
- Homologous match to IL_9AXU_040
- Geometric discrepancy: 0.1577
- The information below is about IL_9AXU_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_02020.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
9F1D|1|B5|A|1685
9F1D|1|B5|U|1686
9F1D|1|B5|U|1687
9F1D|1|B5|A|1688
9F1D|1|B5|G|1689
9F1D|1|B5|A|1690
*
9F1D|1|B5|PSU|1718
9F1D|1|B5|A|1719
9F1D|1|B5|PSU|1720
9F1D|1|B5|PSU|1721
9F1D|1|B5|C|1722
9F1D|1|B5|U|1723
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B
- Large ribosomal subunit protein uL18
- Chain B7
- 5S ribosomal RNA; 5S rRNA
- Chain BI
- 60S ribosomal protein L10
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