IL_9F58_002

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GU*GAC

Length

5 nucleotides

Bulged bases

9F58|1|a|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_002 not in the Motif Atlas

Geometric match to IL_8P9A_242

Geometric discrepancy: 0.0787

The information below is about IL_8P9A_242

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

9F58|1|4|G|25
9F58|1|4|U|26
*
9F58|1|a|G|337
9F58|1|a|A|338
9F58|1|a|C|339

Current chains

Chain 4

5.8S rRNA

Chain a

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L4-A

Chain J

60S ribosomal protein L26-A