IL_9F58_011
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_011 not in the Motif Atlas
- Homologous match to IL_8CRE_008
- Geometric discrepancy: 0.0747
- The information below is about IL_8CRE_008
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
9F58|1|a|C|125
9F58|1|a|U|126
9F58|1|a|G|127
*
9F58|1|a|C|141
9F58|1|a|C|142
9F58|1|a|G|143
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain T
- 60S ribosomal protein L35-A
- Chain h
- 60S ribosomal protein L8-A
- Chain o
- 60S ribosomal protein L15-A
- Chain z
- 60S ribosomal protein L25
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