IL_9F58_015

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

9F58|1|a|U|190

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_015 not in the Motif Atlas

Homologous match to IL_8CRE_013

Geometric discrepancy: 0.1288

The information below is about IL_8CRE_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9F58|1|a|G|189
9F58|1|a|U|190
9F58|1|a|U|191
*
9F58|1|a|A|204
9F58|1|a|C|205

Current chains

Chain a

25S rRNA

Nearby chains

Chain 3

60S ribosomal protein L4-A

Chain J

60S ribosomal protein L26-A