IL_9F58_020

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

9F58|1|a|U|534, 9F58|1|a|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_020 not in the Motif Atlas

Homologous match to IL_8P9A_248

Geometric discrepancy: 0.0814

The information below is about IL_8P9A_248

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25001.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F58|1|a|G|531
9F58|1|a|A|532
9F58|1|a|A|533
9F58|1|a|U|534
9F58|1|a|G|535
9F58|1|a|U|536
9F58|1|a|A|537
9F58|1|a|G|538
*
9F58|1|a|U|553
9F58|1|a|A|554
9F58|1|a|U|555
9F58|1|a|U|556
9F58|1|a|A|557
9F58|1|a|U|558
9F58|1|a|A|559
9F58|1|a|G|560
9F58|1|a|C|561

Current chains

Chain a

25S rRNA

Nearby chains

Chain n

60S ribosomal protein L14-A

Chain t

60S ribosomal protein L20-A