IL_9F58_023

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGG*UGCAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_023 not in the Motif Atlas

Homologous match to IL_8P9A_251

Geometric discrepancy: 0.0763

The information below is about IL_8P9A_251

Detailed Annotation

UAA/GAN variation

Broad Annotation

No text annotation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9F58|1|a|G|725
9F58|1|a|G|726
9F58|1|a|G|727
9F58|1|a|G|728
*
9F58|1|a|U|741
9F58|1|a|G|742
9F58|1|a|C|743
9F58|1|a|A|744
9F58|1|a|C|745

Current chains

Chain a

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L29

Chain r

60S ribosomal protein L18-A