IL_9F58_036

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAU*AAG

Length

8 nucleotides

Bulged bases

9F58|1|a|A|1103

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_036 not in the Motif Atlas

Homologous match to IL_8P9A_264

Geometric discrepancy: 0.1658

The information below is about IL_8P9A_264

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25463.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9F58|1|a|C|977
9F58|1|a|G|978
9F58|1|a|U|979
9F58|1|a|A|980
9F58|1|a|U|981
*
9F58|1|a|A|1102
9F58|1|a|A|1103
9F58|1|a|G|1104

Current chains

Chain a

25S rRNA

Nearby chains

Chain M

60S ribosomal protein L29

Chain g

60S ribosomal protein L7-A

Chain r

60S ribosomal protein L18-A