IL_9F58_039

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AA*UUU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_039 not in the Motif Atlas

Homologous match to IL_8P9A_267

Geometric discrepancy: 0.1071

The information below is about IL_8P9A_267

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

58

Unit IDs

9F58|1|a|A|997
9F58|1|a|A|998
*
9F58|1|a|U|1050
9F58|1|a|U|1051
9F58|1|a|U|1052

Current chains

Chain a

25S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain e

60S ribosomal protein L5

Chain j

60S ribosomal protein L10

Chain u

60S ribosomal protein L21-A