IL_9F58_071

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_071 not in the Motif Atlas

Homologous match to IL_8P9A_300

Geometric discrepancy: 0.0969

The information below is about IL_8P9A_300

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_00680.1

Basepair signature

cWW-L-R-tWH-L-R-L-cWW-cWW

Number of instances in this motif group

3

Unit IDs

9F58|1|a|U|1702
9F58|1|a|U|1703
9F58|1|a|A|1704
9F58|1|a|U|1705
9F58|1|a|C|1706
9F58|1|a|A|1707
*
9F58|1|a|U|1737
9F58|1|a|C|1738
9F58|1|a|U|1739
9F58|1|a|U|1740
9F58|1|a|A|1741
9F58|1|a|U|1742
9F58|1|a|G|1743

Current chains

Chain a

25S rRNA

Nearby chains

Chain S

60S ribosomal protein L34-A