IL_9F58_087

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAAGU*AACCAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_087 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.1488

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9F58|1|a|U|2211
9F58|1|a|C|2212
9F58|1|a|A|2213
9F58|1|a|A|2214
9F58|1|a|A|2215
9F58|1|a|G|2216
9F58|1|a|U|2217
*
9F58|1|a|A|2228
9F58|1|a|A|2229
9F58|1|a|C|2230
9F58|1|a|C|2231
9F58|1|a|A|2232
9F58|1|a|A|2233
9F58|1|a|G|2234

Current chains

Chain a

25S rRNA

Nearby chains

Chain U

60S ribosomal protein L36-A