IL_9F58_089

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

9F58|1|a|A|2281, 9F58|1|a|C|2287, 9F58|1|a|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_089 not in the Motif Atlas

Homologous match to IL_8CRE_095

Geometric discrepancy: 0.0775

The information below is about IL_8CRE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

9F58|1|a|C|2277
9F58|1|a|C|2278
9F58|1|a|A|2279
9F58|1|a|A|2280
9F58|1|a|A|2281
9F58|1|a|U|2282
9F58|1|a|G|2283
9F58|1|a|C|2284
9F58|1|a|C|2285
9F58|1|a|U|2286
9F58|1|a|C|2287
9F58|1|a|G|2288
*
9F58|1|a|C|2304
9F58|1|a|G|2305
9F58|1|a|C|2306
9F58|1|a|G|2307

Current chains

Chain a

25S rRNA

Nearby chains

Chain A

eIF-2-alpha kinase GCN2

Chain H

eIF-2-alpha kinase GCN2