IL_9F58_106

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

9F58|1|a|G|2945, 9F58|1|a|A|2946

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_106 not in the Motif Atlas

Homologous match to IL_8P9A_335

Geometric discrepancy: 0.0667

The information below is about IL_8P9A_335

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

27

Unit IDs

9F58|1|a|C|2879
9F58|1|a|U|2880
9F58|1|a|C|2881
*
9F58|1|a|G|2943
9F58|1|a|U|2944
9F58|1|a|G|2945
9F58|1|a|A|2946
9F58|1|a|G|2947

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3

Chain w

60S ribosomal protein L23-A