IL_9F58_113

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAU*AGAACG

Length

10 nucleotides

Bulged bases

9F58|1|a|A|3142, 9F58|1|a|C|3143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_113 not in the Motif Atlas

Homologous match to IL_8P9A_342

Geometric discrepancy: 0.0527

The information below is about IL_8P9A_342

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

9F58|1|a|C|3004
9F58|1|a|A|3005
9F58|1|a|A|3006
9F58|1|a|U|3007
*
9F58|1|a|A|3139
9F58|1|a|G|3140
9F58|1|a|A|3141
9F58|1|a|A|3142
9F58|1|a|C|3143
9F58|1|a|G|3144

Current chains

Chain a

25S rRNA

Nearby chains

Chain d

60S ribosomal protein L3

Chain p

60S ribosomal protein L16-A