IL_9F58_115
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAGUAC*GGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_115 not in the Motif Atlas
- Homologous match to IL_8P9A_344
- Geometric discrepancy: 0.0725
- The information below is about IL_8P9A_344
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9F58|1|a|C|3018
9F58|1|a|U|3019
9F58|1|a|U|3020
9F58|1|a|A|3021
9F58|1|a|G|3022
9F58|1|a|U|3023
9F58|1|a|A|3024
9F58|1|a|C|3025
*
9F58|1|a|G|3030
9F58|1|a|G|3031
9F58|1|a|A|3032
9F58|1|a|A|3033
9F58|1|a|C|3034
9F58|1|a|A|3035
9F58|1|a|G|3036
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain E
- eIF-2-alpha kinase GCN2
- Chain Y
- Ubiquitin-60S ribosomal protein L40
- Chain d
- 60S ribosomal protein L3
- Chain i
- 60S ribosomal protein L9-A
- Chain w
- 60S ribosomal protein L23-A
Coloring options: