IL_9F58_125

3D structure

PDB id

9F58 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Gcn2 dimer bound to the 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAACG*UUG

Length

8 nucleotides

Bulged bases

9F58|1|a|U|3259

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F58_125 not in the Motif Atlas

Homologous match to IL_8CRE_133

Geometric discrepancy: 0.1211

The information below is about IL_8CRE_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82741.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

9F58|1|a|C|3225
9F58|1|a|A|3226
9F58|1|a|A|3227
9F58|1|a|C|3228
9F58|1|a|G|3229
*
9F58|1|a|U|3258
9F58|1|a|U|3259
9F58|1|a|G|3260

Current chains

Chain a

25S rRNA

Nearby chains

Chain f

60S ribosomal protein L6-A

Chain n

60S ribosomal protein L14-A

Chain p

60S ribosomal protein L16-A