IL_9F58_140
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACCGAGUAG*CGAAACU
- Length
- 16 nucleotides
- Bulged bases
- 9F58|1|b|C|73
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F58_140 not in the Motif Atlas
- Homologous match to IL_8P9A_369
- Geometric discrepancy: 0.0937
- The information below is about IL_8P9A_369
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.3
- Basepair signature
- cWW-cWW-tSH-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 20
Unit IDs
9F58|1|b|A|72
9F58|1|b|C|73
9F58|1|b|C|74
9F58|1|b|G|75
9F58|1|b|A|76
9F58|1|b|G|77
9F58|1|b|U|78
9F58|1|b|A|79
9F58|1|b|G|80
*
9F58|1|b|C|100
9F58|1|b|G|101
9F58|1|b|A|102
9F58|1|b|A|103
9F58|1|b|A|104
9F58|1|b|C|105
9F58|1|b|U|106
Current chains
- Chain b
- 5S rRNA
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain g
- 60S ribosomal protein L7-A
- Chain j
- 60S ribosomal protein L10
- Chain t
- 60S ribosomal protein L20-A
- Chain u
- 60S ribosomal protein L21-A
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