IL_9F9S_004
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 9F9S|1|L1|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_004 not in the Motif Atlas
- Homologous match to IL_8P9A_234
- Geometric discrepancy: 0.0686
- The information below is about IL_8P9A_234
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- tSH-tHW-tHH-tHS
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9F9S|1|L1|C|31
9F9S|1|L1|U|32
9F9S|1|L1|G|33
9F9S|1|L1|A|34
9F9S|1|L1|A|35
9F9S|1|L1|C|36
9F9S|1|L1|U|37
9F9S|1|L1|U|38
*
9F9S|1|L1|A|45
9F9S|1|L1|U|46
9F9S|1|L1|C|47
9F9S|1|L1|A|48
9F9S|1|L1|A|49
9F9S|1|L1|U|50
9F9S|1|L1|A|51
9F9S|1|L1|A|52
9F9S|1|L1|G|53
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain LG
- 60S ribosomal protein L13-A
- Chain LI
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L42-A
- Chain Lh
- 60S ribosomal protein L37-A
- Chain Lq
- 60S ribosomal protein L28
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