IL_9F9S_012

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

9F9S|1|L1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F9S_012 not in the Motif Atlas

Homologous match to IL_8P9A_242

Geometric discrepancy: 0.1268

The information below is about IL_8P9A_242

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9F9S|1|L1|G|337
9F9S|1|L1|A|338
9F9S|1|L1|C|339
*
9F9S|1|L2|G|25
9F9S|1|L2|U|26

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Chain L2

Saccharomyces cerevisiae S288C 5.8S ribosomal RNA

Nearby chains

Chain Ls

60S ribosomal protein L26-A

Chain Ly

60S ribosomal protein L4-A