IL_9F9S_015
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUU*AUA
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F9S_015 not in the Motif Atlas
- Homologous match to IL_8P9A_245
- Geometric discrepancy: 0.1021
- The information below is about IL_8P9A_245
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_71625.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 78
Unit IDs
9F9S|1|L1|U|429
9F9S|1|L1|U|430
9F9S|1|L1|U|431
*
9F9S|1|L1|A|628
9F9S|1|L1|U|629
9F9S|1|L1|A|630
Current chains
- Chain L1
- Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)
Nearby chains
- Chain L2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LJ
- 60S ribosomal protein L16-A
- Chain Ll
- 60S ribosomal protein L33-A
- Chain Lm
- 60S ribosomal protein L32
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